MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2541433268200588
cnr4.828642118123567
efc0.5892052092320417
fber90.39642333984375
fwhmavg3.6221366666666666
fwhmx3.60751
fwhmy3.84903
fwhmz3.40987
icvscsf0.16526316109249067
icvsgm0.5071137802610012
icvswm0.3276230586465082
inumed0.9932659864425659
inurange0.3250557690858842
qi10.0
qi20.0008207154442530656
rpvecsf32.27593670656011
rpvegm12.522928142926895
rpvewm20.748775642455726
sizex180
sizey256
sizez256
snrcsf2.514589460458454
snrgm10.541728044382467
snrtotal10.596297218482787
snrwm18.732574150607444
snrdcsf13.835401735248977
snrdgm29.413777325024235
snrdtotal30.41690191108803
snrdwm48.00152667299088
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.8561287120582182
summarybgmad13.648374557495117
summarybgmean52.607582092285156
summarybgmedian51.475685119628906
summarybgn2887019.0
summarybgp0531.924871253967282
summarybgp9577.43398513793947
summarybgstdv14.238178253173828
summarycsfk0.7234001660172664
summarycsfmad119.94236755371094
summarycsfmean302.6654968261719
summarycsfmedian288.231201171875
summarycsfn9674.0
summarycsfp05136.06024703979494
summarycsfp95490.55540313720707
summarycsfstdv114.61763763427734
summarygmk0.7294163498562667
summarygmmad52.815895080566406
summarygmmean616.0188598632812
summarygmmedian612.7735595703125
summarygmn53393.0
summarygmp05526.7547119140625
summarygmp95718.5602050781249
summarygmstdv58.12783432006836
summarywmk1.0926404350069117
summarywmmad45.597618103027344
summarywmmean993.2689819335938
summarywmmedian1000.0098266601562
summarywmn160520.0
summarywmp05890.2947021484374
summarywmp951068.1652893066407
summarywmstdv53.383304595947266
tpmoverlapcsf0.2116088718175888
tpmoverlapgm0.5484973788261414
tpmoverlapwm0.529570460319519
wm2max0.6473247138167944

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma51c39cc455c98ea45ff5057f48bd4b0
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.