MRIQC: individual T1w report

Summary

Subject ID: 044_ControlPre.
Date and time: 2018-05-06, 21:12.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2541433268200588
cnr			4.828642118123567
efc			0.5892052092320417
fber			90.39642333984375
fwhm	avg		3.6221366666666666
fwhm	x		3.60751
fwhm	y		3.84903
fwhm	z		3.40987
icvs	csf		0.16526316109249067
icvs	gm		0.5071137802610012
icvs	wm		0.3276230586465082
inu	med		0.9932659864425659
inu	range		0.3250557690858842
qi	1		0.0
qi	2		0.0008207154442530656
rpve	csf		32.27593670656011
rpve	gm		12.522928142926895
rpve	wm		20.748775642455726
size	x		180
size	y		256
size	z		256
snr	csf		2.514589460458454
snr	gm		10.541728044382467
snr	total		10.596297218482787
snr	wm		18.732574150607444
snrd	csf		13.835401735248977
snrd	gm		29.413777325024235
snrd	total		30.41690191108803
snrd	wm		48.00152667299088
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.8561287120582182
summary	bg	mad	13.648374557495117
summary	bg	mean	52.607582092285156
summary	bg	median	51.475685119628906
summary	bg	n	2887019.0
summary	bg	p05	31.924871253967282
summary	bg	p95	77.43398513793947
summary	bg	stdv	14.238178253173828
summary	csf	k	0.7234001660172664
summary	csf	mad	119.94236755371094
summary	csf	mean	302.6654968261719
summary	csf	median	288.231201171875
summary	csf	n	9674.0
summary	csf	p05	136.06024703979494
summary	csf	p95	490.55540313720707
summary	csf	stdv	114.61763763427734
summary	gm	k	0.7294163498562667
summary	gm	mad	52.815895080566406
summary	gm	mean	616.0188598632812
summary	gm	median	612.7735595703125
summary	gm	n	53393.0
summary	gm	p05	526.7547119140625
summary	gm	p95	718.5602050781249
summary	gm	stdv	58.12783432006836
summary	wm	k	1.0926404350069117
summary	wm	mad	45.597618103027344
summary	wm	mean	993.2689819335938
summary	wm	median	1000.0098266601562
summary	wm	n	160520.0
summary	wm	p05	890.2947021484374
summary	wm	p95	1068.1652893066407
summary	wm	stdv	53.383304595947266
tpm	overlap	csf	0.2116088718175888
tpm	overlap	gm	0.5484973788261414
tpm	overlap	wm	0.529570460319519
wm2max			0.6473247138167944

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a51c39cc455c98ea45ff5057f48bd4b0
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.